Pioneering diagnostics

Publications in Molecular Diagnostics Field

DiversiLab® (Strain Typing System)

Faecal Carriage of Carbapenemase-Producing Gram-Negative Bacilli in Hospital Settings in Southern France
Pantel A, Marchandin H, Prere MF, Boutet-Dubois A, Brieu-Roche N, Gaschet A, Davin-Regli A, Sotto A, Lavigne JP.
European Journal of Clinical Microbiology & Infectious Diseases 2015

Evaluation of Repetitive Element Polymerase Chain Reaction for Surveillance of MethicillinResistant Staphylococcus Aureus at a Large Academic Medical Center and Community Hospitals
Wang SH, Stevenson KB, Hines L, Mediavilla JR, Khan Y, Soni R, Dutch W, Brandt E, Bannerman T, Kreiswirth BN, Pancholi P.
Diagnostic Microbiology and Infectious Disease 2015

Clonal Relationship and Differentiation Among Mycobacterium Abscessus Isolates As Determined Using the Semiautomated Repetitive Extragenic Palindromic Sequence PCR-Based DiversiLab® System
Mougari F, Raskine L, Ferroni A, Marcon E, Sermet-Gaudelus I, Veziris N, Heym B, Gaillard JL, Nassif X, Cambau E.
Journal of Clinical Microbiology 2014

International Multicenter Evaluation of the DiversiLab Bacterial Typing System for Escherichia Coli and Klebsiella Spp.
Voets G.M., Leverstein-van Hall M.A., Kolbe-Busch S., van der Zande A., Church D., Kaase M., Grisold A., Upton M., Cloutman-Green E., Canton R., Friedrich A.W., Fluit A.C.
Journal of Clinical Microbiology 2013

FilmArray® (PCR syndromic molecular diagnosis)

FilmArray® BioThreat-E test™

Use of FilmArray System for Detection of Zaire Ebolavirus in a Small Hospital, Bo, Sierra Leone
Leski TA, Ansumana R, Taitt CR, Lamin JM, Bangura U, Lahai J, Mbayo G, Kanneh MB, Bawo B, Bockarie AS, Scullion M, Phillips CL, Horner CP, Jacobsen KH, Stenger DA.
Journal of Clinical Microbiology 2015

Comparison of FilmArray and Quantitative Real-Time Reverse Transcriptase PCR for Detection of Zaire Ebolavirus From Contrived and Clinical Specimens
Southern TR, Racsa LD, Albarino CG, Fey PD, Hinrichs SH, Murphy CN, Herrera VL, Sambol AR, Hill CE, Ryan EL, Kraft CS, Campbell S, Sealy TK, Schuh A, Ritchie JC, Lyon GM, III, Mehta AK, Varkey JB, Ribner BS, Brantly KP, Stroher U, Iwen PC, Burd EM.
Journal of Clinical Microbiology 2015

FilmArray® Gastrointestinal Panel

Multicenter Evaluation of the BioFire FilmArray Gastrointestinal Panel for the Etiologic Diagnosis of Infectious Gastroenteritis
Buss SN, Leber A, Chapin K, Fey PD, Bankowski MJ, Jones MK, Rogatcheva M, Kanack KJ, Bourzac KM.
Journal of Clinical Microbiology 2015

Use of a Culture-Independent Gastrointestinal Multiplex PCR Panel During a Shigellosis Outbreak: Considerations for Clinical Laboratories and Public Health
Prakash VP, Leblanc L, Alexander-Scott NE, Skidmore J, Simmons D, Quilliam D, Chapin KC.
Journal of Clinical Microbiology 2015

Multiplex Gastrointestinal Pathogen Panels: Implications for Infection Control
Rand KH, Tremblay EE, Hoidal M, Fisher LB, Grau KR, Karst SM.
Diagnostic Microbiology and Infectious Disease 2015

Spectrum of Enteropathogens Detected by the FilmArray GI Panel in a Multicentre Study of Community-Acquired Gastroenteritis
Spina A, Kerr KG, Cormican M, Barbut F, Eigentler A, Zerva L, Tassios P, Popescu GA, Rafila A, Eerola E, Batista J, Maass M, Aschbacher R, Olsen KE, Allerberger F.
Clinical Microbiology and Infection 2015

How Well Does Physician Selection of Microbiologic Tests Identify Clostridium Difficile and Other Pathogens in Paediatric Diarrhoea? Insights Using Multiplex PCR-Based Detection
Stockmann C, Rogatcheva M, Harrel B, Vaughn M, Crisp R, Poritz M, Thatcher S, Korgenski EK, Barney T, Daly J, Pavia AT.
Clinical Microbiology and Infection 2014

Comparative Evaluation of Two Commercial Multiplex Panels for Detection of Gastrointestinal Pathogens by Use of Clinical Stool Specimens
Khare R, Espy MJ, Cebelinski E, Boxrud D, Sloan LM, Cunningham SA, Pritt BS, Patel R, Binnicker MJ.
Journal of Clinical Microbiology 2014

FilmArray® Meningitis/Encephalitis Panel

Preclinical Assessment of a Fully Automated Multiplex PCR Panel for the Detection of Central Nervous System Pathogens
Hanson KE, Slechta ES, Killpack JA, Heyrend C, Lunt T, Daly JA, Hemmert AC, Blaschke AJ.
Journal of Clinical Microbiology 2015

Diagnostic Performance of a Multiplex PCR Assay for Meningitis in an HIV-Infected Population in Uganda
Rhein J, Bahr NC, Hemmert AC, Cloud JL, Bellamkonda S, Oswald C, Lo E, Nabeta H, Kiggundu R, Akampurira A, Musubire A, Williams DA, Meya DB, Boulware DR.
Diagnostic Microbiology and Infectious Disease 2015

FilmArray® Respiratory Panel

Community Surveillance of Respiratory Viruses Among Families in the Utah Better Identification of Germs-Longitudinal Viral Epidemiology (BIG-LoVE) Study
Byington CL, Ampofo K, Stockmann C, Adler FR, Herbener A, Miller T, Sheng X, Blaschke AJ, Crisp R, Pavia AT.
Clinical Infectious Diseases 2015

Comparison of Turnaround Time (TAT) and Time to Oseltamivir Discontinuation Between Two Respiratory Viral Panel Testing (RVP) Methodologies
ettit N, Matushek S, Charnot-Katsikas A, Tesic V, Boonlayangoor S, Brielmaier B, Pisano J.
Journal of Medical Microbiology 2015

Comparison of the FilmArray® Assay and in-House Real-Time PCR for Detection of Respiratory Infection
Andersson ME, Olofsson S, Lindh M.
Scandinavian Journal of Infectious Diseases 2014

FilmArray® Respiratory Panel Performance in Respiratory Samples From Neonatal Care Units
Piralla A, Lunghi G, Percivalle E, Vigano C, Nasta T, Pugni L, Mosca F, Stronati M, Torresani E, Baldanti F.
Diagnostic Microbiology and Infectious Disease 2014

Impact of a Rapid Respiratory Panel Test on Patient Outcomes
Rogers BB, Shankar P, Jerris RC, Kotzbauer D, Anderson EJ, Watson JR, O'Brien LA, Uwindatwa F, McNamara K, Bost JE.
Archives of Pathology & Laboratory Medicine 2014

Evaluation of the BioFire FilmArray® Respiratory Panel and the GenMark ESensor Respiratory Viral Panel on Lower Respiratory Tract Specimens
Ruggiero P, McMillen T, Tang YW, Babady NE.
Journal of Clinical Microbiology 2014

Multiplex Viral Polymerase Chain Reaction Testing Using the FilmArray® Device Compared with Direct Fluorescent Antibody Testing
Wang J, Simons DB, Adams JL, Jerris RC, Rogers BB.
Laboratory Medicine 2014

FilmArray® Blood Culture Identification Panel

Randomized Trial of Rapid Multiplex Polymerase Chain Reaction-Based Blood Culture Identification and Susceptibility Testing
Banerjee R, Teng CB, Cunningham SA, Ihde SM, Steckelberg JM, Moriarty JP, Shah ND, Mandrekar JN, Patel R.
Clinical Infectious Diseases 2015

Discrimination of Candida Albicans From Candida Dubliniensis by Use of the BioFire FilmArray Blood Culture Identification Panel
Southern TR, Alelew A, Iwen PC.
Journal of Clinical Microbiology 2015

Unanticipated Multiplex PCR-Based Identification of Polymicrobial Blood Culture Resulting in Earlier Isolation, Determination of Susceptibilities, and Optimization of Clinical Care
Timbrook T, Boger MS, Steed LL, Hurst JM.
Journal of Clinical Microbiology 2015

Rapid Identification of Microorganisms From Sterile Body Fluids by Use of FilmArray®
Altun O, Almuhayawi M, Ullberg M, Ozenci V. 
Journal of Clinical Microbiology 2015

FilmArray® : Correction of Previously False-Positive Results by Improved Software
Altun O, Ozenci V. 
Journal of Clinical Microbiology 2015

Implementation and Performance of the BioFire FilmArray® Blood Culture Identification Panel with Antimicrobial Treatment Recommendations for Bloodstream Infections at a Midwestern Academic Tertiary Hospital
Southern TR, VanSchooneveld TC, Bannister DL, Brown TL, Crismon AS, Buss SN, Iwen PC, Fey PD.
Diagnostic Microbiology and Infectious Disease 2015

Evaluation of FilmArray® and Verigene Systems for Rapid Identification of Positive Blood Cultures
Bhatti MM, Boonlayangoor S, Beavis KG, Tesic V.
Journal of Clinical Microbiology 2014

Prospective Assessment of FilmArray® Technology for the Rapid Identification of Yeast Isolated from Blood Cultures
Desoubeaux G, Franck-Martel C, Bailly E, Le Brun C, Gyan E, Goudeau A, Chandenier J, Lanotte P.
Journal of Microbiological Methods 2014

Identification of Microorganisms by FilmArray® and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Prior to Positivity in the Blood Culture System
Almuhayawi M, Altun O, Stralin K, Ozenci V.
Journal of Clinical Microbiology 2014

Comparison Between MALDI-TOF MS and FilmArray® Blood Culture Identification Panel for Rapid Identification of Yeast From Positive Blood Culture
Paolucci M, Foschi C, Tamburini MV, Ambretti S, Lazzarotto T, Landini MP.
Journal of Microbiological Methods 2014

Detection of Neisseria Meningitidis from Negative Blood Cultures and Cerebrospinal Fluid With the FilmArray® Blood Culture Identification Panel
Pardo J, Klinker KP, Borgert SJ, Butler BM, Rand KH, Iovine NM.
Journal of Clinical Microbiology 2014

Direct Identification of Bacteria in Positive Blood Cultures: Comparison of Two Rapid Methods, FilmArray® and Mass Spectrometry
Rand KH, Delano JP.
Diagnostic Microbiology and Infectious Disease 2014

Performance Evaluation of the Verigene® (Nanosphere) and FilmArray® (BioFire® ) Molecular Assays for Identification of Causative Organisms in Bacterial Bloodstream Infections
Ward C, Stocker K, Begum J, Wade P, Ebrahimsa U, Goldenberg SD.
European Journal of Clinical Microbiology and Infectious Diseases 2014

Rapid Identification of Pathogens from Pediatric Blood Cultures by Use of the FilmArray® Blood Culture Identification Panel
Zheng X, Polanco W, Carter D, Shulman S.
Journal of Clinical Microbiology 2014

NucliSENS EasyQ® (Real-Time Molecular Diagnostics System)

Evaluation of the NucliSENS EasyQ KPC Assay for Detection of Klebsiella Pneumoniae Carbapenemase-Producing Enterobacteriaceae
McEwan A.S., Derome A., Meunier D., Burns P.J., Woodford N., Dodgson A.R.
Journal of Clinical Microbiology 2013

Higher Specificity of NASBA Isothermal Technology Versus Real-Time PCR for HIV-1 RNA Quantification on Dried Blood Spots
Mercier-Delarue S., Vray M., Plantier J.C., Maillard T., Adjout Z., de Olivera F., Schnepf N., Maylin S., Simon F., Delaugerre C.
Journal of Clinical Microbiology 2013

Rapid and Sensitive Detection of Bla KPC Gene in Clinical Isolates of Klebsiella Pneumoniae by a Molecular Real-Time Assay
Mosca A., Miragliotta L., Del P.R., Tzakis G., Dalfino L., Bruno F., Pagani L., Migliavacca R., Piazza A., Miragliotta G.
SpringerPlus 2013

Comparison of the Detection of HPV-16, 18, 31, 33, and 45 by Type-Specific DNA- and E6/E7 MRNA-Based Assays of HPV DNA Positive Women With Abnormal Pap Smears
Salimovic-Besic I., Tomic-Cica A., Smailji A., Hukic M.
Journal of Virological Methods 2013

Evaluation of the New NucliSENS EasyQ® KPC Test for Rapid Detection of Klebsiella pneumoniae Carbapenemase Genes (blaKPC)
Spanu T, Fiori B, D'Inzeo T, Canu G, Campoli S, Giani T, Palucci I, Tumbarello M, Sanguinetti M, Rossolini GM
Journal of Clinical Microbiology 2012

Development of a Quantitative Real-Time Nucleic Acid Sequence-Based Amplification Assay with an Internal Control Using Molecular Beacon Probes for Selective and Sensitive Detection of Human Rhinovirus Serotypes.
Sidoti F, Bergallo M, Terlizzi ME, Piasentin Alessio E, Astegiano S, Gasparini G, Cavallo R
Molecular Biotechnology 2012

R-gene® (Real-Time PCR Kits)

Adenovirus r-gene®

Multi-Center Evaluation of the Adenovirus R-Gene® US Assay for the Detection of Adenovirus in Respiratory Samples
Manji R, Zheng X, Patel A, Kowerska M, Vossinas M, Drain A, Todd KM, Lenny N, DeVincenzo JP, Ginocchio CC.
Journal of Clinical Virology 2014

BK Virus r-gene®

Development of a BK Virus Real-Time Quantitative Assay Using the bioMerieux AnalyteSpecific Reagents in Plasma Specimens
Rennert H, Fernandes H, Gilani Z, Sipley J.
American Journal of Clinical Pathology 2015

Toward Standardization of BK Virus Monitoring: Evaluation of the BK Virus R-Gene® Kit for Quantification of BK Viral Load in Urine, Whole Blood and Plasma Specimens
Sueur C, Solis M, Meddeb M, Soulier E, Domingo-Calap P, Lepiller Q, Freitag R, Bahram S, Caillard S, Barth H, Stoll-Keller F, Fafi-Kremer S.
Journal of Clinical Microbiology 2014

CMV r-gene®

Symptomatic Cytomegalovirus Gastrointestinal Infection With Positive Quantitative Real-Time PCR Findings in Apparently Immunocompetent Patients: a Case Series
Bernard S, Germi R, Lupo J, Laverriere MH, Masse V, Morand P, Gavazzi G.
Clinical Microbiology and Infection 2015

EBV r-gene®

Analytical and Clinical Performance of a New Molecular Assay for Epstein-Barr Virus DNA Quantitation
Hubner M, Bozic M, Konrad PM, Grohs K, Santner BI, Kessler HH.
Journal of Virological Methods 2015

MWS r-gene®

Screening of Respiratory Pathogens by Respiratory Multi Well System (MWS) R-Gene® Assay in Hospitalized Patients
Paba P, Farchi F, Mortati E, Ciccozzi M, Piperno M, Perno CF, Ciotti M.
The New Microbiologica 2014

Comparative Evaluation of Six Commercialized Multiplex PCR Kits for the Diagnosis of Respiratory Infections
Pillet S., Lardeux M., Dina J., Grattard F., Verhoeven P., Le Goff J., Vabret A., Pozzetto B.
PloS One 2013

Parechovirus r-gene®

Diagnosis of human parechovirus infections of the central nervous system with a commercial real-time transcription-polymerase chain reaction kit and direct genotyping of cerebrospinal fluid specimens
Mirand A, Archimbaud C, Chambon M, Regagnon C, Brebion A, Bailly J.-L, Peigue-Lafeuille H, Henquell C.
Diagnostic Microbiology and Infectious Disease 2012

Human parechovirus infections, Lyon, France, 2008-10: evidence for severe cases.
Schuffenecker I, Javouhey E, Gillet Y, Kugener B, Billaud G, Floret D, Lina B, Morfin F.
Journal of Clinical Virology 2012

Rhino&EV/Cc r-gene®

Evaluation of Real-Time RT-PCR Rhino&EV/Cc R-Gene® (bioMérieux) Kit Versions 1 and 2 for Rhinovirus Detection
Brebion A, Mirand A, Regagnon C, Archimbaud C, Chambon M, Peigue-Lafeuille H, Henquell C.
Journal of Clinical Virology 2015


Comparative Evaluation of the New FDA Approved THxID-BRAF™ Test with High Resolution Melting and Sanger Sequencing
Marchant J, Mange A, Larrieux M, Costes V, Solassol J.
BMC Cancer 2014

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